This message happens is there are clauses for Name/Arity in your program and you try to modify this predicate using assert/1, retract/1 or a related predicate.

What is wrong?

Normally, compiled code results in static predicates. These cannot be modified at runtime. Knowing code is static helps the compiler. If you want to make dynamic code, i.e., code that can be modified at runtime, use the dynamic/1 directive. Normally you place this directive near the start of a file or just above the code:

:- dynamic arc/2.

arc(a, b).
arc(a, c).
...

Generally it is not a very good idea to load dynamic data as program data. If some rule depends partly on static data and partly on dynamic define them as separate predicates and write a predicate combining the two types of data properly:

:- dynamic
        user_arc/2.

arc(A, B) :-
        user_arc(A, B).
arc(A, B) :-
        predefined_arc(A, B).

predefined_arc(a, b).
...

Though assert/1 on a not-yet-existent predicate creates the predicate as dynamic, it is good practice to declare all dynamic code using the dynamic/1 directive.

Abolish is evil

The predicate abolish/1 deletes all traces of a predicate from the program: its clauses, its attributes (dynamic, multifile, meta) and its source-information. Normally you just want to delete the clauses, so you use retractall/1, e.g.:

        ...,
        retractall(arc(_,_)),

See also ReadDynamicFromFile.md