Collects a number of biological data analytics tasks. This library provides tools for the bio_db served data, empowering downstream analyses of user's experimental data.

Installation and loading:

?- pack_install(bio_analytics).
        % also installs pack(lib). other dependencies are installed at load time via lib
?- use_module(library(lib)).
?- lib(bio_analytics).

The library comes with one experimental dataset: data/silac/bt.csv which is used in the example files in directory examples/ .

author

- nicos angelopoulos

version

- 0.1 2019/4/22

- 0.2 2019/5/08

- 0.3 2019/5/11

- 0.4 2020/9/18

- 0.5 2023/1/2

- 0.6 2023/6/6

- 0.7 2024/10/7

license

- MIT

 bio_analytics_version(-Vers, -Date)

Version and release date.

?- bio_analytics_version(V,D).
V = 0:7:0,
D = date(2024,10,17).

Undocumented predicates

The following predicates are exported, but not or incorrectly documented.

 bio_diffex(Arg1, Arg2, Arg3, Arg4)

 bio_p_adjust(Arg1, Arg2, Arg3)

 bio_symbols(Arg1, Arg2, Arg3)

 bio_volcano_plot(Arg1, Arg2)

 exp_gene_family_string_graph(Arg1, Arg2, Arg3, Arg4)

 exp_go_over(Arg1, Arg2, Arg3)

 exp_go_over_string_graphs(Arg1, Arg2, Arg3, Arg4)

 exp_go_over_string_graphs_multi(Arg1)

 exp_reac_over(Arg1, Arg2, Arg3)

 gene_family(Arg1, Arg2, Arg3)

 go_org_symbol(Arg1, Arg2, Arg3)

 go_org_symbols(Arg1, Arg2, Arg3)

 go_over_plot(Arg1, Arg2)

 go_string_graph(Arg1, Arg2, Arg3)

 go_symbols_reach(Arg1, Arg2, Arg3)

 symbols_string_graph(Arg1, Arg2, Arg3)